Arabidopsis thaliana TAIR10: 10 kbp from Chr1:1,504,365..1,514,364

Araport11

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CDS Araport 11 [?]

Locus Araport 11 [?]

Protein Coding Gene Models Araport11 [?]

Assembly

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Annotation Units [?]

Assembly Updates [?]

Gaps [?]

Community/Alternative Annotation

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Aceview Gene Models [?]	Gnomon Predictions [?]	Polyadenylation sites (AtPolyA-DB) [?]
Eugene Predictions [?]	Hanada et al. 2007 Gene Models [?]	Quesneville et al. Natural transposons [?]

DNA

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6 Frame Translation [?]

DNA/GC [?]

Expression

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AtPeptide (Castellana et al. 2008) [?]	Microarray ATH1-121501 probes [?]	mRNA col-0 (Lister et al. 2008) [?]
AtProteome (Baerenfaller et al. 2008) [?]	MPSS flower (Lu et al. 2005) [?]	Small RNAs (ASRP) [?]
CATMA primers [?]	MPSS seed 1 [?]	smRNA col-0 (Gregory et al. 2008) [?]
CATMA transriptome data (analysis) (Aubourg et al. 2007) [?]	MPSS seed 2 [?]	smRNA col-0 (Lister et al. 2008) [?]

Gene

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Genomic Features

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DNA replication origins (Costas et al. 2011) [?]	PlantPromoterDB [?]
Natural transposons [?]	Tandem Repeats [?]

Methylation and Phosphorylation

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Orthologs and Gene Families

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Eudicot Gene Families (Phytozome 11) [?]	Monocot Gene Families (Phytozome 11) [?]	Phytozome (previous release) [?]
Fish Orthologs (Inparanoid) [?]	Nematode Orthologs (Inparanoid) [?]	Vertebrate Orthologs (Inparanoid) [?]
Insect Orthologs (Inparanoid) [?]	Other Angiosperm Gene Families (Phytozome 11) [?]	Yeast and Fungi Orthologs (Inparanoid) [?]
Model Organism Orthologs (Inparanoid) [?]	Other Orthologs (Inparanoid) [?]

Sequence Similarity

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Variation

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Bay-0 and Shakdara polymorphisms (JGI) [?]	Marker [?]	Ws Polymorphisms (J Schiefelbein lab, 2011) [?]
Bur-0 and Tsu-1 polymorphisms (Ossowski et al. 2008) [?]	Polymorphic Region Predictions (Zeller et al. 2008) [?]	Ws-2 polymorphisms (Hall Lab, Ashelford et al. 2011) [?]
Cvi-0 and Ler-1 polymorphisms (Ecker) [?]	Polymorphisms [?]
Est-1 Polymorphisms (Schneeberger et al. 2009) [?]	T-DNAs/Transposons [?]

Analysis

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VistaPlot

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Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp)

Snapshots

Landmark or Region: Examples: AT1G01040, AT3G52910.1, ABC11_171G2, AtMRP11, Chr1:1504365..1514364, ChrC:63781..68780.
Data Source	Scroll/Zoom: Flip